if you go carbed, you don't need a fuel pump at all... if you go FI, you should be able to use your stock pump... as far as the transmission mounts, the transmission only mounts in 2 spots... one is at the motor, and one is at the a crossmember, which on your jeep, would happen to be the skidplate... there should be some sort of plate to mount to the transmission, so just get creative and figure a way to connect that to the skidplate... sometimes the Tcases are too long, and yes, that can create a problem for the driveshaft... then remember this... most Tcases have a fixed yoke rather than a slipyoke... that eliminates a few inches there... and then there are some cases that are pretty slim.... just measure your stock transmission and Tcase from bellhousing to tailshaft... then keep that in mind when choosing your upgrade