I haven't had the pleasure of working on a TF 999 but at least once did I on a TF 727 which is basically the same transmission with heavy upgrades to the clutch packs . I do not personally think you'll have to drop the valve body , unless your planning on installing a shift kit , to make the repair on the shift linkage . The park rod does plug into the valve body and seems to be spring driven but it should be all mechanical bolt off items from what my shop manual illustrates . You are right to question what pops out when dropping a valve body since there are check balls that can easily be lost not to mention making certain that they must be replaced into the right veins in the valve body or line pressure is lost when shifting must occur. I definately will say to take this like you've been this far in every task and repair you've taken on so far , slow and careful. You'll first want to find what is not working right with the shift lever in terms of the detents and it seems that the park rod may have some or all to do with it since it is most likely spring driven . I'm sorry I cannot be of more help on this but can try to look up what I can in my factory manual of what you may need . If you feel the valve body must be dropped , post back and will look up what tricks this may entail . Usually , there will be steel plates that sit between the valve body and trans case that are called orifice plates that have passages that control shifting when line pressure increases among other parts like accumulator and bands for example. Please take a good look once the pan is down and the dripping allows you to work with full focus and not have to dodge red drops . This I believe will be the focus of the repair , looking for what isn't allowing the ratchet action for the detent to occur. As you know , the shift lever outside the case should click into position for each position . Since your currently able to select all positions , I'm thinking the park rod may have much to do with the internal linkage not staying in position with each movement of the column lever. From the pictures in the manual , this seems to be a contributor to the cause. Looking forward to your posts of your findings but please do tread carefully . Thanks Scott .